PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.10G027400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 216aa    MW: 23822.7 Da    PI: 4.658
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.10G027400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.7e-3971071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++Cv+apyf+ ++ + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++
  Manes.10G027400.1.p   7 SCGACKFLRRKCTSECVFAPYFCYDEaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQIAS 96 
                          6***********************98689************************************************************* PP

               DUF260  90 lkaelallkee 100
                          l++e++ l+++
  Manes.10G027400.1.p  97 LQEEIEILGHQ 107
                          ******99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5176108IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAATHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QQQIASLQEE IEILGHQMAN LSVGIVSRGS  120
SQTTSNPNCE IQNYSLQDAI NMQYYQNQPA APLNVSGYAS GNQAFNSQMN AELPPIYEWE  180
DQNPFCESHP YTLDRLLEGA DQEVFPYCSW LDTGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091407.11e-133PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS83e-59LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A067LJS21e-133A0A067LJS2_JATCU; Uncharacterized protein
STRINGPOPTR_0010s20800.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-60LOB domain-containing protein 33